CMJ operates four Heritage Centers throughout Israel. 

Two Heritage Centers are situated in Jerusalem. One based at Christ Church. The Church, inside the Old Citywalls, make it for many one of the most beautiful and treasured buildings in Jerusalem. The Hebrew inscriptions within the Church – the Ten Commandments, Lord's Prayer and Apostles Creed, have been a constant indication to visitors, particularly the many Jewish visitors, of our historic involvement in their life and struggle.

The Anglican School in Jerusalem hosts another museum. The property on Prophet Street has played a crucial role in the development of modern medical missions in the Middle East. The Heritage Center sitting within the renovated reception of the School, contains models, displays and bric-a-brac of the past use of the historical buildings of the School. 

Beit Immanuel in Jaffa, the former home of Baron Ustinov, receives many Israeli and Christian tour groups to the Heritage Center. The beautiful garden and interesting displays entice many visitors to linger around the story of the Mission.

Enmeshed around the walls of the common room of the Guest House, Beit Bracha preserves the impact of the British Christians in the Galilee region. With a fantastic vista of the Kinneret patrons and visitors can learn of the drama and involvement of CMJ in the north as the Jewish people return to the Land of Israel.